Technical Videos
Follow the Vimeo links for more information about datasets, papers, and full author lists.
Zebrahub | Release Video — Transcriptomic Data
Zebrahub | Supp. Video 3: Light-sheet time-lapse of Tg(h2afva:h2afva-mcherry ; mezzo:eGFP) embryo starting at 50% epiboly.
DaXi imaging, nuclei segmentation and cell tracking of a D. rerio (zebrafish) embryo
DaXi imaging, nuclei segmentation and cell tracking of a D. rerio (zebrafish) embryo starting at roughly 12 hpf and ending at roughly 18 hpf. Transgenic line h2afva.mCherry. Illumination wavelength 561 nm, 2,200 × 800 × 300 µm × 2 views. Voxel sizes 0.440 × 0.440 × 1.806 µm. Acquisition lasted 6.6 h with 30-s acquisition interval for a total of 791 time points. Yang, B., Lange, M., Millett-Sikking, A. et al.
Zebrahub | Supp. Video 10: In silico fate mapping of the late NMP presumptive territory.
Aydin — User-friendly, Fast, Self-Supervised and Unsupervised Image Denoising for All.
Aydin is a user-friendly, feature-rich, and fast image denoising tool that provides a number of self-supervised, auto-tuned, and unsupervised image denoising algorithms. Aydin handles from the get-go n-dimensional array-structured images with an arbitrary number of batch dimensions, channel dimensions, and typically up to 4 spatio-temporal dimensions.
High-Resolution, Large Imaging Volume, and Multi-View Single Objective Light-Sheet Microscopy
Bin Yang1*, Merlin Lange, Alfred Millett-Sikking, Ahmet Can Solak, Shruthi Vijaykumar, Wanpeng Wang, Hirofumi Kobayashi, Matthew N Mccarroll, Lachlan W Whitehead, Reto P Fiolka, Thomas B. Kornberg, Andrew G York, Loic A. Royer*
High-Resolution, Large Field-of-View, and Multi-View Single Objective Light-Sheet Microscopy
Bin Yang, Alfred Millett-Sikking, Merlin Lange, Ahmet Can Solak, Hirofumi Kobayashi, Andrew York, Loic A. Royer
